Figure 5 . Numbers and families of the top 27 transcription factors in M. rosenbergii
CDSs are critically important features of mRNA transcripts that contain coding exons. Of the 70,536 transcripts, 57,963 CDS were identified by blast against the NR, Swiss-Prot, and KOG databases. 63.4% of these transcript CDSs’ length ranged between 201 bp and 1400 bp (Figure 6A).
LncRNAs were predicted by CPC2, CNCI, Pfam, and PLEK. Overall 6,287 LncRNA were identified (Figure 6B). Their length varied from 200 bp to 6,482 bp. A majority of lncRNA lengths (>71%) ranged between 1,000 and 3,000 bp, and the average length was 1,557.03 bp, shorter than that of mRNA’s transcripts (Figure 6C).